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arXiv:2310.17585 · Physical Review A

Boosting biomolecular switch efficiency with quantum coherence

Mattheus Burkhard, Onur Pusuluk, Tristan Farrow

Published Jul 1, 2024• 6 citations
arXivHTMLPDF

Abstract

The resource theory of quantum thermodynamics has emerged as a powerful tool for exploring the out-of-equilibrium dynamics of microscopic and highly correlated systems. Recently, it has been employed in photoisomerization, a mechanism facilitating vision through the isomerism of the photoreceptor protein rhodopsin, to elucidate the fundamental limits of efficiency inherent in this physical process. Limited attention has been given to the impact of energetic quantum coherences in this process, as these coherences do not influence the energy-level populations within an individual molecule subjected to thermal operations. However, a specific type of energetic quantum coherences can impact the energy-level populations in the scenario involving two or more molecules. In this study, we examine the case of two molecules undergoing photoisomerization to show that energetic quantum coherence can function as a resource that amplifies the efficiency of photoisomerization. These insights offer evidence for the role of energetic quantum coherence as a key resource in the realm of quantum thermodynamics at mesoscopic scales. Published by the American Physical Society 2024

DOI
10.1103/physreva.110.012411

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The resource theory of quantum thermodynamics has emerged as a powerful tool for exploring the out-of-equilibrium dynamics of microscopic and highly correlated systems. Recently, it has been employed in photoisomerization, a mechanism facilitating vision through the isomerism of the photoreceptor protein rhodopsin, to elucidate the fundamental limits of efficiency inherent in this physical process. Limited attention has been given to the impact of energetic quantum coherences in this process, as these coherences do not influence the energy-level populations within an individual molecule subjected to thermal operations. However, a specific type of energetic quantum coherences can impact the energy-level populations in the scenario involving two or more molecules. In this study, we examine the case of two molecules undergoing photoisomerization to show that energetic quantum coherence can function as a resource that amplifies the efficiency of photoisomerization. These insights offer evidence for the role of energetic quantum coherence as a key resource in the realm of quantum thermodynamics at mesoscopic scales. Published by the American Physical Society 2024
Photoisomerization, a photochemical process underlying many biological mechanisms, has been modeled recently within the quantum resource theory of thermodynamics. This approach has emerged as a promising tool for studying fundamental limitations to nanoscale processes independently of the microscopic details governing their dynamics. On the other hand, correlations between physical systems have been shown to play a crucial role in quantum thermodynamics by lowering the work cost of certain operations. Here we explore quantitatively how correlations between multiple photoswitches can enhance the efficiency of photoisomerization beyond that attainable for single molecules. Furthermore, our analysis provides insights into the interplay between quantum and classical correlations in these transformations.
Quantum resource theory formulations of thermodynamics offer a versatile tool for the study of fundamental limitations to the efficiency of physical processes, independently of the microscopic details governing their dynamics. Despite the ubiquitous presence of non-Markovian dynamics in open quantum systems at the nanoscale, rigorous proofs of their beneficial effects on the efficiency of quantum dynamical processes at the bio-molecular level have not been reported yet. Here we combine the resource theory of athermality with concepts from the theory of divisibility classes for quantum channels, to prove that memory effects can increase the efficiency of photoisomerization to levels that are not achievable under a purely thermal Markovian (i.e. memoryless) evolution. This provides rigorous evidence that memory effects can provide a resource in biological quantum dynamics, and, more generally, quantum thermodynamics at the nanoscale.
Thermodynamical systems at the nanoscale, such as single molecules interacting with highly structured vibrational environments, typically undergo nonequilibrium physical processes that lack precise microscopic descriptions. Photoisomerization is such an example, which has emerged as a platform on which to study single-molecule ultrafast photochemical processes from a quantum resource theoretic perspective. However, the upper bounds on its efficiency have only been obtained under significant simplifications that make the mathematics of the resource-theoretical treatment manageable. Here we generalize previous models for the photoisomers, while retaining the full vibrational structure, and still obtain analytical bounds on the efficiency of photoisomerization. We quantify the impact of such a vibrational structure on the optimal photoisomerization quantum yield both when the vibrational coordinate has no dynamics of its own and when we take into account the vibrational dynamics. This work serves as an example of how to bridge the gap between the abstract language of quantum resource theories and the open system formulation of nanoscale processes.
Quantum resource theory formulations of thermodynamics offer a versatile tool for the study of fundamental limitations to the efficiency of physical processes, independently of the microscopic details governing their dynamics. Despite the ubiquitous presence of non-Markovian dynamics in open quantum systems at the nanoscale, rigorous proofs of their beneficial effects on the efficiency of quantum dynamical processes at the molecular level have not been reported yet. Here we combine the quantum resource theory of athermality with concepts from the theory of divisibility classes of quantum channels to prove that memory effects can increase the efficiency of photoisomerization to levels that are not achievable under a purely thermal Markovian (i.e., memoryless) evolution. This provides rigorous evidence that memory effects can provide a resource in quantum thermodynamics at the nanoscale.
Planck found, when attempting to describe the way in which hot bodies glow, that energy at microscopic scales often comes in discrete chunks. Thus began the long and intimate relationship between the field of thermodynamics, which explores our ability to manipulate heat and other energy transfers between macroscopic systems, and quantum mechanics, which explains the dynamics of individual microscopic systems. Even as both our technology and our theoretical investigations have extended to ever-smaller devices, our understanding of quantum effects on thermodynamics has remained almost exclusively limited to the quantized nature of energy. There is much more, however, to quantum theory than energy quantization. In this thesis we focus on the property of quantum coherence, the ability of quantum systems to emulate Schrodinger’s cat and somehow be neither dead nor alive, but something completely different altogether. We provide a simple and elegant formulation for the processing of coherence in thermodynamics, relying on the fact that thermodynamical processes possess an underlying time-translation symmetry. This fact allows us to quantify the ways in which coherence can play an active role, facilitating otherwise impossible thermodynamic transformations. We argue that coherence should be thought of as a distinctly quantum-mechanical thermodynamic resource. By considering an isolated quantum system connected, for some period of time, to a thermal bath, we give fundamental limitations on how coherence can be irreversibly manipulated. These limitations are related to those dictated on energy transfer by the second law of thermodynamics. Others topics that are investigated here is what is the role of correlations at the smallest scales and the conversion of quantum coherence into work. It has long been appreciated that thermodynamics is subtly interlinked with the notion of information. This work provides evidence that, to apply the laws of thermodynamics to the smallest systems around us, we must develop deeper insights into the nature of quantum information.