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arXiv:2105.00172 · PLoS ONE

A QUBO formulation for top-τ eigencentrality nodes

Prosper D. Akrobotu, Tamsin E. James, Christian F. A. Negre, Susan M. Mniszewski

Published Jul 14, 2022• 8 citations
arXivHTMLPDF

Abstract

The efficient calculation of the centrality or "hierarchy" of nodes in a network has gained great relevance in recent years due to the generation of large amounts of data. The eigenvector centrality (aka eigencentrality) is quickly becoming a good metric for centrality due to both its simplicity and fidelity. In this work we lay the foundations for solving the eigencentrality problem of ranking the importance of the nodes of a network with scores from the eigenvector of the network, using quantum computational paradigms such as quantum annealing and gate-based quantum computing. The problem is reformulated as a quadratic unconstrained binary optimization (QUBO) that can be solved on both quantum architectures. The results focus on correctly identifying a given number of the most important nodes in numerous networks given by the sparse vector solution of our QUBO formulation of the problem of identifying the top-τ highest eigencentrality nodes in a network on both the D-Wave and IBM quantum computers.

DOI
10.1371/journal.pone.0271292

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The efficient calculation of the centrality or "hierarchy" of nodes in a network has gained great relevance in recent years due to the generation of large amounts of data. The eigenvector centrality (aka eigencentrality) is quickly becoming a good metric for centrality due to both its simplicity and fidelity. In this work we lay the foundations for solving the eigencentrality problem of ranking the importance of the nodes of a network with scores from the eigenvector of the network, using quantum computational paradigms such as quantum annealing and gate-based quantum computing. The problem is reformulated as a quadratic unconstrained binary optimization (QUBO) that can be solved on both quantum architectures. The results focus on correctly identifying a given number of the most important nodes in numerous networks given by the sparse vector solution of our QUBO formulation of the problem of identifying the top-τ highest eigencentrality nodes in a network on both the D-Wave and IBM quantum computers.
The efficient calculation of the centrality or hierarchy of nodes in a network has gained great relevance in recent years due to the generation of large amounts of data. The eigenvector centrality is quickly becoming a good metric for centrality due to both its simplicity and fidelity. In this work we lay the foundations for the calculation of eigenvector centrality using quantum computational paradigms such as quantum annealing and gate-based quantum computing. The problem is reformulated as a quadratic unconstrained binary optimization (QUBO) that can be solved on both quantum architectures. The results focus on correctly identifying a given number of the most important nodes in numerous networks given by our QUBO formulation of eigenvector centrality on both the D-Wave and IBM quantum computers.
Quadratic Unconstrained Binary Optimization (QUBO) can be seen as a generic language for optimization problems. QUBOs attract particular attention since they can be solved with quantum hardware, like quantum annealers or quantum gate computers running QAOA. In this paper, we present two novel QUBO formulations for k-SAT and Hamiltonian Cycles that scale significantly better than existing approaches. For k-SAT we reduce the growth of the QUBO matrix from O(k) to O(log(k)). For Hamiltonian Cycles the matrix no longer grows quadratically in the number of nodes, as currently, but linearly in the number of edges and logarithmically in the number of nodes.
The Quadratic Unconstrained Binary Optimization (QUBO) model has gained prominence in recent years with the discovery that it unifies a rich variety of combinatorial optimization problems. By its association with the Ising problem in physics, the QUBO model has emerged as an underpinning of the quantum computing area known as quantum annealing and has become a subject of study in neuromorphic computing. Through these connections, QUBO models lie at the heart of experimentation carried out with quantum computers developed by D-Wave Systems and neuromorphic computers developed by IBM. Computational experience is being amassed by both the classical and the quantum computing communities that highlights not only the potential of the QUBO model but also its effectiveness as an alternative to traditional modeling and solution methodologies. This tutorial discloses the basic features of the QUBO model that give it the power and flexibility to encompass the range of applications that have thrust it onto center stage of the optimization field. We show how many different types of constraining relationships arising in practice can be embodied within the "unconstrained" QUBO formulation in a very natural manner using penalty functions, yielding exact model representations in contrast to the approximate representations produced by customary uses of penalty functions. Each step of generating such models is illustrated in detail by simple numerical examples, to highlight the convenience of using QUBO models in numerous settings. We also describe recent innovations for solving QUBO models that offer a fertile avenue for integrating classical and quantum computing and for applying these models in machine learning.
In many complex networking systems, identifying critical nodes whose removal maximally disrupts network connectivity remains an important yet computationally challenging problem for network vulnerability analysis. Finding near-optimal solutions is known to be NP-hard. In this paper, we explore the potential of near-term quantum computing devices to efficiently solve the k-Critical Node Detection (k-CND) problem. We formulate the problem as a quadratic unconstrained binary optimization (QUBO), a mathematical optimization over binary variables amenable to solution on quantum annealers. We present a novel integer linear programming (ILP) formulation and its conversion into QUBOs and provide benchmarking results on D-Wave's quantum annealers. Our theoretical analysis proves that our proposed formulation, ILP2, generates substantially smaller QUBO than the state-of-the-art ILP1 formulation. Experimentally, our efficient QUBO yields a 59.7% decrease in QUBO variables on a graph with 10 vertices and 40 edges, and an 11.7% reduction in qubits on a 15-vertex, 22-edge graph compared to that of QUBO1. We analyze the solution quality and running time across quantum, classical, and hybrid solvers to assess the potential for quantum advantage. Our work showcases the promise and challenges of tackling this important graph problem on near-term quantum hardware.
We introduce RinQ, a hybrid quantum-classical framework for identifying functionally critical residues in proteins by formulating centrality detection as a Quadratic Unconstrained Binary Optimization (QUBO) problem. Protein structures are modeled as residue interaction networks (RINs), and the QUBO formulations are solved using D-Wave’s simulated annealing. Applied to a diverse set of proteins, RinQ consistently identifies central residues that closely align with classical benchmarks, demonstrating both the accuracy and robustness of the approach.
Abstract Quantum computers have strict requirements for the problems that they can efficiently solve. One of the principal limiting factor for the performances of noisy intermediate-scale quantum (NISQ) devices is the number of qubits required by the running algorithm. Several combinatorial optimization problems can be solved with NISQ devices once that a corresponding quadratic unconstrained binary optimization (QUBO) form is derived. Numerous techniques have been proposed to achieve such reformulations and, depending on the method chosen, the number of binary variables required, and therefore of qubits, can vary considerably. The aim of this work is to drastically reduce the variables needed for these QUBO reformulations in order to unlock the possibility to efficiently obtain optimal solutions for a class of optimization problems with NISQ devices. This goal is achieved by introducing novel tools that allow an efficient use of slack variables, even for problems with non-linear constraints, without the need to approximate the starting problem. We divide our new techniques in two independent parts, called the iterative quadratic polynomial and the master-satellite methods. Hence, we show how to apply our techniques in case of an NP-hard optimization problem inspired by a real-world financial scenario called Max-Profit Balance Settlement . We follow by submitting several instances of this problem to two D-wave quantum annealers, comparing the performances of our novel approach with the standard methods used in these scenarios. Moreover, this study allows to appreciate several performance differences between the D-wave Advantage and next-generation Advantage2 quantum annealers. We show that the adoption of our techniques in this context allows to obtain QUBO formulations with significantly fewer slack variables, i.e. around 90% less, and D-wave annealers provide considerably higher correct solution rates, which moreover do not decrease with the input size as fast as when adopting standard techniques.