In this thesis we study and characterize the behavior of Bose-Einstein condensates in a BJJ, using two different theoretical formalisms: the mean-field approximation (with the Gross-Pitaevskii equation) and many-body calculations (based on Bose-Hubbard models). \n\t\t\t\t With single-component Bose-Einstein condensates, we have focused on the study of the structure of the ground state as a function of the system parameters. We have looked for strongly correlated states, that cannot be described with mean-field theories, and we have proposed a variational wave function that captures the structure of the ground state for a broad interval of the system parameters. We have also studied the nonlinear effects of the Gross-Pitaevskii equation, visible when atom-atom interactions are strong. \n\t\t\t\t In the case of binary mixtures of Bose-Einstein condensates we have performed an intensive study of the different regimes that can arise and in which conditions. The standard two-mode approximation is one of the most used in the study of the Josephson effect, as it gives simple analytic equations that capture, to a great extend, the behavior of the system. When the link between condensates is not weak enough, one has to consider a correction to this approximation, namely, the improved two-mode approximation. In this thesis, we have derived this last approximation for the binary mixture and we have checked its validity comparing it with numerical simulations of the three-dimensional Gross-Pitaevskii equation. Moreover, as the Josephson dynamics is almost one-dimensional, we have considered the two most common reductions of the dimensionality of the Gross-Pitaevskii equation. In this case, we have also compared, using simulations, these one-dimensional reductions with the three-dimensional equation. \n\t\t\t\t We have also studied spinor condensates in an external BJJ. We have focused on condensates formed by atoms with spin
F=1, which can be in any of the three internal states
mF=0,pm1. Furthermore, in contrast to the binary mixture, spin interchange is allowed, so that the number of particles of each component becomes a dynamic variable. First, we have studied this system within the mean-field framework, using the Gross-Pitaevskii equation. We have derived the two-mode approximation equations and we have focused in studying the decoupling of the Josephson effect and the population transfer dynamics. In this case, we also compare the results with numerical simulations of the three dimensional Gross-Pitaevskii equation. Second, we have studied the spinor BJJ using the Bose-Hubbard formalism, because some features of quantum fluctuations are better captured than with the mean-field. We have characterized the ground state, paying special attention to the regions where it is strongly correlated. We have seen how the spin singlet formation (strongly correlated state between two particles) affects the structure of the ground state. \n\n\t\t\t\t Finally, we have studied finite temperature effects on spinor Bose-Einstein condensates in the presence of a magnetic field, for two different cases. First, we have analyzed a condensate formed by
F=1 atoms with contact interactions. We have considered that the condensate was formed by atoms in the internal state
mF=0 and we have studied the dependence of the fluctuations of the other two components
mF=pm1 as a function of temperature. We have used the Bogoliubov formalism applied to an homogeneous system, and then, we have generalized the result to an harmonic trap by using the local density approximation. Second, we have studied a condensate formed by particles with
F=3 with contact interactions and moreover, dipolar interactions. In a similar way as the previous case, we consider that the condensate is formed by particles with
mF=−3 and we study the fluctuations in
mF=−2 and
mF=−3.