In this work, we demonstrate measurements of photodestruction rates of translationally cold, charged biomolecules. The long-term stable storage of the molecular ions in an ion trap at ultra-high vacuum conditions allows measurement of small rates and verification that rates are linear in photodestruction laser intensity. Measurements were performed on singly protonated molecules of the organic compound glycyrrhetinic acid (C30H46O4), dissociated by a continuous-wave UV laser (266 nm) using different intensities. The molecules were sympathetically cooled by simultaneously trapped laser-cooled barium ions to translational temperatures of below 150 mK. Destruction rates of less than 0.05 s^-1 and a cross section of (1.1 +/- 0.1) * 10^-17 cm^2 have been determined. An extension to tunable UV laser sources would permit high-resolution dissociation spectroscopic studies on a wide variety of cold complex molecules.
In this work, we demonstrate measurements of photodestruction rates of translationally cold, charged biomolecules. The long-term stable storage of the molecular ions in an ion trap at ultra-high vacuum conditions allows measurement of small rates and verification that rates are linear in photodestruction laser intensity. Measurements were performed on singly protonated molecules of the organic compound glycyrrhetinic acid (C30H46O4), dissociated by a continuous-wave UV laser (266 nm) using different intensities. The molecules were sympathetically cooled by simultaneously trapped laser-cooled barium ions to translational temperatures of below 150 mK. Destruction rates of less than 0.05 s^-1 and a cross section of (1.1 +/- 0.1) * 10^-17 cm^2 have been determined. An extension to tunable UV laser sources would permit high-resolution dissociation spectroscopic studies on a wide variety of cold complex molecules.
This work presents various novel results in the field of experimental and theoretical trapped ion studies. All investigations involve laser-cooled 138Ba+ ions confined in a linear quadrupole ion trap, which serve as coolant for complex molecular ions, as target for collisions with neutral atoms, or as model system in theoretical analyses. The special feature of the apparatus used in this work, is a molecular ion source based on electrospray ionization that allows for the production of gas-phase molecular ions of almost arbitrary species with a maximum mass-to-charge ratio of 2,000 Da. Trapped together with laser-cooled 138Ba+ ions, the molecular ions can be cooled down, kept cold and investigated for many minutes and in principle for up to hours in a nearly collisionless environment.
In this work, the sympathetic cooling of complex molecular ions to translational temperatures below 1 K is demonstrated for different types of molecules covering a mass range from 182 to 12,400 Da. Using the example of the protein cytochrome c, with a mass of about 12,400 Da the most massive molecular species sympathetically cooled in an ion trap so far, the methods for detection of successful trapping and cooling, and temperature determination are presented in detail. In one case, multiply protonated molecules of the protein cytochrome c have been cooled to less than 0.75 K. Furthermore, two methods for measuring photodestruction rates of cold, trapped complex molecular ions have been developed that can, for example, be applied in destructive spectroscopy schemes. Both techniques are demonstrated using the example of singly protonated glycyrrhetinic acid molecules (GAH+) dissociated by an ultraviolet (UV) laser. Measurements of the photodestruction rate were performed at different intensities of the UV laser, and rates as low as 0.05 s-1 and less have been determined, which is only possible due to the long ion storage times that can be achieved with this apparatus. For the UV laser wavelength of 266 nm, a destruction cross section of (1.1±0.1)∙10E-17 cm2 for GAH+ has been determined.
In this work, feasibility studies towards internal cooling of trapped complex molecular ions have been performed. Such an additional internal cooling could be realized via collisions with laser-cooled neutral atoms. To test their suitability, neutral atoms of Li, Na, K, Rb, Cs, and Yb have been collided with trapped laser-cooled and not cooled Ba+ ions as well as with complex molecular ions. For all species charge exchange reactions with Ba+ ions have been observed excluding these species for collisional cooling. While K, Rb, and Cs showed charge exchange reactions with ground state and laser-excited Ba+ ions, the charge exchange rates of Yb and Ba+ were found to be state dependent. Collisions of neutral Yb atoms were found to be reactive and lead to the formation of adducts and fragments, in contrast to the alkali metals for which no such reactions have been observed. In addition, the motion of cooled, trapped ions has been studied theoretically via simulations. When the translational energy of a trapped ion ensemble is sufficiently reduced, a first-order phase transition from a liquid to a solid state occurs with the ion ensemble changing from a disordered ion cloud to an ordered ion crystal. As ions in a linear quadrupole trap arrange in shell structures, a free motion in radial direction is disabled, and ions can only move to neighboring shells when their kinetic energy is high enough to overcome a certain potential barrier. The simulations have shown that intershell diffusion rates in the considered ion crystals increase exponentially when the ion temperatures exceed values that well agree with the predictions of other established models. Ion ensembles of different ion numbers (300, 500, and 1000 138Ba+ ions) and symmetries (prolate and spherical) have been investigated showing a clear tendency for the phase transition temperatures: The higher the ion number, the lower is the transition temperature.
This thesis reports on experimental and theoretical studies of the sympathetic cooling of complex molecular ions demonstrating that this general method for cooling atomic and molecular ions is reliable and efficient.
For this purpose, complex molecular ions and barium ions have been confined simultaneously in a linear Paul trap. The complex molecular ions are generated in an electrospray ionization system and transferred to the trap via a 2 m long octopole ion guide. These molecular ions are pre-cooled by room temperature helium buffer gas so that they can be captured by the trap. The atomic barium ions are loaded from a barium evaporator oven and are laser-cooled by a 493 nm cooling laser and a 650 nm repumping
laser. Due to the mutual Coulomb interaction among these charged particles, the kinetic energy of the complex molecular ions can be reduced significantly.
In our experiments we have demonstrated the sympathetic cooling of various molecules (CO2, Alexa Fluor 350, glycyrrhetinic acid, cytochrome c) covering a wide mass range from a few tens to 13000 amu. In every case the molecular ions could be cooled down to millikelvin temperatures.
Photo-chemical reactions of the 138Ba+ ions in the (2P1/2) excited state with gases such as O2, CO2, or N2O, could be observed. If the initial 138Ba+ ion ensemble is cold, the produced 138BaO+ ions are cold as well, with a similar temperature as the laser-cooled barium ions (a few tens of millikelvin). The back-reaction of 138BaO+ ions with neutral CO to 138Ba+ is possible and was observed in our experiments as well.
A powerful molecular dynamics (MD) simulation program has been developed. With this program dynamic properties of ion ensembles, such as sympathetic interactions or heating effects, have been investigated and experimental results have been analyzed to obtain, for example, ion numbers and temperatures. Additionally, the feasibility of nondestructive spectroscopy via an optical dipole excitation and the lineshape of rovibrational
transitions of 1.4 and 5.1 μm have been studied.
Gas-phase multiply charged proteins have been sympathetically cooled to translational temperatures below 1K by Coulomb interaction with laser-cooled barium ions in a linear ion trap. In one case, an ensemble of 53 cytochrome c molecules (mass $\ensuremath{\simeq}12\phantom{\rule{0.3em}{0ex}}390\phantom{\rule{0.3em}{0ex}}\mathrm{amu}$, charge +17e) was cooled by $\ensuremath{\simeq}160$ laser-cooled barium ions to less than 0.75K. Storage times of more than 20min have been observed and could easily be extended to more than an hour. The technique is applicable to a wide variety of complex molecules.
The recent development of a range of techniques for producing cold atoms and molecules at very low translational temperatures T < or = 1 K has provided the opportunity to investigate collisional processes in a new physical regime. We have recently presented a new experimental method to study low-temperature reactive collisions between translationally cold ions and neutral molecules (S. Willitsch et al., Phys. Rev. Lett. 2008, 100, 043203). Our technique relies on the combination of a quadrupole-guide velocity selector for the generation of translationally cold neutral molecules with a facility to produce ordered structures of cold ions (Coulomb crystals) by laser cooling in a linear quadrupole ion trap. The strong localisation of the ions in the trap in combination with the high sensitivity of laser-induced-fluorescence detection enabled us to study chemical reactions on the single-particle level, down to temperatures of T approximately 1 K. In the current paper, we present a detailed characterisation of the scope and limitations of this method based on our study of the reaction between laser-cooled Ca+ ions and velocity-selected CH3F molecules. The properties of our cold-neutrals source and the dependence of the measured rate constant on the shape of the Coulomb crystals, trapping and laser-cooling parameters are discussed. An extension of our technique for the study of low-temperature reactions with sympathetically cooled molecular ions (translational temperature T > 10 mK) is presented and first results on the charge-transfer reaction between OCS+ and ND3 are discussed. Finally, perspectives for further developments of our method are explored.
A range of experimental techniques for application in reaction studies between ionic and neutral atoms/molecules and high resolution spectroscopy experiments with sympathetically cooled molecular ions are presented. A novel ion trap loading scheme using the photo-ionisation of atoms generated by the pulsed laser ablation of a solid calcium target has been characterised. We have identified the range of ablation laser fluences that must be used in order to produce a flux of neutral calcium atoms, which is a prerequisite for isotope selective ion trap loading. Calcium ions are trapped and laser cooled in a linear radio-frequency ion trap. We have developed a spectroscopy scheme that allows the entire fluorescence spectrum of trapped ions to be rapidly collected with high precision while maintaining a low ion temperature and good ion localisation throughout interrogation. The scheme has been demonstrated by measuring the saturation intensity of the calcium ion 4S1/2?4P1/2 transition. We have developed a novel scheme to measure the secular motion of trapped ions and demonstrated the application of the technique to ion-neutral collision reaction experiments. Employing pulsed excitation and Doppler velocimetry, we have measured the centre-of-mass mode frequency of single ions as well as large ion crystals with a frequency precision better than 2x10-3 within an interrogation time on the order of seconds. This method has been used to measure the mass of ions and observe charge exchange collisions between trapped calcium isotopes. In particular, we have measured the 44Ca++40Ca!40Ca++44Ca reaction cross section and demonstrated the single-event resolution of the technique. Finally, we have developed a novel all-optical broadband scheme for exciting, amplifying and measuring the secular motion of ions in the trap. Oscillation induced by optical excitation has been coherently amplified to control and measure the ion's secular motion. Requiring only a single interrogation laser, the ion's oscillation amplitude can be precisely controlled. The application of this technique to non-destructive spectroscopy of trapped molecular ions is discussed.
An investigation of the sympathetic cooling \nmethod for the studies of large ultra-cold molecular ions in a quadrupole ion trap has been conducted.Molecular dynamics simulations are performed to study the rf heating mechanisms in the ion trap. The dependence of \nrf heating rates on the ion temperature, trapping parameters, \nand the number of ions is obtained. New rf heating mechanism \naffecting ultra-cold ion clouds exposed to laser radiation is described.The saturation spectroscopy setup of the hyperfine spectra \nof the molecular iodine has been built to provide an accurate frequency reference for the laser wavelength. This reference is used to obtain the fluorescence lineshapes of \nthe laser cooled Mg+ ions under different trapping conditions.The ion temperatures are deduced from the measurements, and \nthe influence of the rf heating rates on the fluorescence lineshapes \nis also discussed. Cooling of the heavy (m=720a.u.) fullerene ions to under 10K by the means of the sympathetic cooling by the Mg+ ions(m=24a.u.) is demonstrated. The single-photon imaging system has been developed and used to obtain the images of the Mg+ ion crystal structures at mK temperatures.